Cellxgene Census
MCP Serverby hxk622 · Added 5mo ago
Claude
4
Install
git clone https://github.com/hxk622/TokenDanceAdd to Claude
claude mcp add cellxgene-censusQuick Setup Config
Copy & paste ready~/Library/Application Support/Claude/claude_desktop_config.json (macOS) %APPDATA%\Claude\claude_desktop_config.json (Windows)
{
"mcpServers": {
"cellxgene-census": {
"command": "npx",
"args": [
"@modelcontextprotocol/cellxgene-census"
]
}
}
}Paste into your Claude Desktop config file, then restart Claude.
About
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
Tags
ai-mlpythongobashexpressskill